Dark Reader References in the Literature
How are other researchers using Dark Reader equipment?

The following list contains just those articles that we are aware of that describe using a Dark Reader.
Please let us know if YOU mention the use of a Dark Reader in a publication, so it can be added to the list.
Reviews
M Seville (2001)
A whole new way of looking at things: the use of Dark Reader technology to detect fluorophors.
Electrophoresis 5: 814-828

H Daum, M Seville (2002)
The ToolBox: Cutting back on UV damage.
Modern Drug Discovery 5: 18-24
Research Articles
* Protein visualization using fluorescent stains, etc. ** GFPs and other fluorescent proteins. The rest are DNA and RNA visualization and cloning


SE. Roden, PH Dutton, PA Morin (2009)
AFLP Fragment Isolation Technique as a Method to Produce Random Sequences for Single Nucleotide Polymorphism Discovery in the Green Turtle, Chelonia mydas.
J. Heredity 100:390-393

** VP Klink, KH Kim, V Martins, MH MacDonald, HS. Beard, NW Alkharouf, SK Lee, SC Park, BF Matthews (2009)
A correlation between host-mediated expression of parasite genes as tandem inverted repeats and abrogation of development of female Heterodera glycines cyst formation during infection of Glycine max.
Planta

** JK Seo1, 2, HG Lee1 and KH Kim (2009)
Systemic gene delivery into soybean by simple rub-inoculation with plasmid DNA of a Soybean mosaic virus -based vector
Archives of Virology, 154: 1432-8798

BT Wilhelm, S Marguerat, S Watt, F Schubert, V Wood, I Goodhead, CJ Penkett, J Rogers, J Bèhler (2008)
Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution
Nature 453: 1239-1243

H Almanza, C Cubillos, I Angulo, F Mateos, JR. Castùn, WHM. van der Poel, J Vinje, J Bçrcena, I Mena (2008)
Self-Assembly of the Recombinant Capsid Protein of a Swine Norovirus into Virus-Like Particles and Evaluation of Monoclonal Antibodies Cross-Reactive with a Human Strain from Genogroup II
Journal of Clinical Microbiology 46: 3971-3979

MJ Blow, T Zhang, T Woyke, CF Speller, A Krivoshapkin, DY Yang, A Dereviank, EM Rubin (2008)
Identification of ancient remains through genomic sequencing
Genome Res. 18: 1347-1353

SA Wakelin, MJ Colloff RS Kookana (2008)
Assessing the Effect of Wastewater Treatment Plant Effluent on Microbial Function and Community Structure in the Sediment of a Freshwater Stream with Variable Seasonal Flow
Applied and Environmental Microbiology 74: 2659-2668

TA Burnes, RA Blanchette, JA Smith (2008)
Black Currant Clonal Identity and White Pine Blister Rust Resistance.
HortScience 43: 6-279

* A Decanini, PR Karunadharma, CL Nordgaard, X Feng, TW Olsen, DA Ferrington (2008)
Human retinal pigment epithelium proteome changes in early diabetes
Diabetologia, 51:1432-0428

**A Beer, MA Vivier (2008)
Vv-AMP1, a ripening induced peptide from Vitis vinifera shows strong antifungal activity
Plant Biology 8:75

**S Beggah, C Vogne, E Zenaro, JR van der Meer (2008)
Mutant HbpR transcription activator isolation for 2-chlorobiphenyl via green fluorescent protein-based flow cytometry and cell sorting
Microbial Biotechnology 1: 68 - 78

JD Neufeld, J Vohra, MG Dumont, T Lueders, M Manefield, MW Friedrich, JC Murrell
DNA stable-isotope probing
Nature Protocols 2: 860 - 866

S Haldar, S Chakravorty, M Bhalla, S De Majumdar, J Sivaswami Tyagi (2007)
Simplified detection of Mycobacterium tuberculosis in sputum using smear microscopy and PCR with molecular beacons.
J Med Microbiol 56: 1356-1362

Y Jiang, C Ke, PA Mieczkowski, and PE Marszalek (2007)
Detecting Ultraviolet Damage in Single DNA Molecules by Atomic Force Microscopy
Biophysical Journal 93:1758-1767

V Corby-Harris, AC Pontaroli, LJ Shimkets, J Bennetzen, KE. Habel, DEL Promislow (2007)
Geographical Distribution and Diversity of Bacteria Associated with Natural Populations of Drosophila melanogaster
Applied and Environmental Microbiology, 73: 3470-3479

EV Olsen, JC Sykora, IB Sorokulova, IH Chen, WC Neely, JM Barbaree, VA Petrenkod, VJ Vodyanoy (2007)
Phage Fusion Proteins as Bioselective Receptors For Piezoelectric Sensors.
ECS Transactions, 2: 9-25

MS Medina-Martínez, M Uyttendaele, A Rajkovic, P Nadal, J Debevere (2007)
Degradation of N-acyl- L-homoserine-lactones by Bacillus cereus in culture media and pork extract
Appl. Environ. Microbiol. 73: 2329-2332

J Khattra, AD Delaney, Y Zhao, A Siddiqui, et al (2007)
Large-scale production of SAGE libraries from microdissected tissues, flow-sorted cells, and cell lines.
Genome Research 17:108-116

VB Kovalskaa, VP Tokarb, MY Losytskyya, T Deligeorgievc, A Vassilevc, N Gadjevc, K.-H. Drexhaged, S.M. Yarmoluk (2006)
Studies of monomeric and homodimeric oxazolo[4,5-b]pyridinium cyanine dyes as fluorescent probes for nucleic acids visualization
Journal Biochemical Biophysical Methods, 68: 155-165

*
KH Kim, KM Brown, PV Harris, JA Langston, JR Cherry (2007)
A Proteomics Strategy To Discover Glucosidases from Aspergillus fumigatus with Two-Dimensional Page In-Gel Activity Assay and Tandem Mass Spectrometry
Journal of Proteome Research 6: 4749–4757

* EP Walsh, DJ Lamont, KA Beattie, MJR Stark (2007)
Proteins Interacting With Saccharomyces cerevisiae Type 1 Protein Phosphatase Catalytic Subunit Identified by Single-Step Affinity Purification and Mass Spectrometry
Methods in Molecular Biology, Vol 365: 1064-374 Protein Phosphatase Protocols, Humana Press


** CA Brosnan, N Mitter, M Christie, NA Smith, PM Waterhouse, BJ Carroll (2007)
Nuclear gene silencing directs reception of long-distance mRNA silencing in Arabidopsis
PNAS 104: 14741–14746

LE Williams, C Detter, K Barry, A Lapidus, AO Summers (2006)
Facile Recovery of Individual High-Molecular-Weight, Low-Copy-Number Natural Plasmids for Genomic Sequencing.
Applied and Environmental Microbiology, 72: 4899-4906

BE Arenz, BW Held, JA Jurgens, RL Farrell, RA Blanchette (2006)
Fungal diversity in soils and historic wood from the Ross Sea Region of Antarctica.
Soil Biology & Biochemistry, 38: 3057–3064

CCR Ragin, E Taioli, JL Weissfeld, JS White, KM Rossie, F Modugno, SM Gollin (2006)
11q13 amplification status and human papillomavirus in relation to p16 expression defines two distinct etiologies of head and neck tumours.
British Journal of Cancer, 95: 1432-1438

T Gebru, A Hailu, PG Kremsner, JFJ Kun, MPP Grobusch (2006)
Molecular surveillance of mutations in the cytochrome b gene of Plasmodium falciparum in Gabon and Ethiopia
Malaria Journal, 5:112-

C Dale, M Beeton, C Harbison, T Jones, M Pontes (2006)
Isolation, Pure Culture, and Characterization of "Candidatus Arsenophonus arthropodicus," an Intracellular Secondary Endosymbiont from the Hippoboscid Louse Fly Pseudolynchia canariensis
Applied and Environmental Microbiology, 72: 2997-3004

B Yount, RS Roberts, L Lindesmith, and RS Baric (2006)
Rewiring the severe acute respiratory syndrome coronavirus (SARS-CoV) transcription circuit: Engineering a recombination-resistant genome
PNAS, 103: 12546-12551

AP Hellmann, U Rohleder, C Eichmann, I Pfeiffer, W Parson, U Schleenbecker (2006)
A Proposal for Standardization in Forensic Canine DNA Typing: Allele Nomenclature of Six Canine-Specific STR Loci
Journal of Forensic Sciences 51:274

Y Inoue, Y Moriyasu (2006)
Autophagy Is Not a Main Contributor to the Degradation of Phospholipids in Tobacco Cells Cultured under Sucrose Starvation Conditions
Plant and Cell Physiology, 47:471-480

EF DeLong, CM Preston, T Mincer, V Rich, SJ Hallam, NU Frigaard, A Martinez, MB Sullivan, R Edwards, BR Brito, SW Chisholm, DM Karl (2006)
Community Genomics Among Stratified Microbial Assemblages in the Ocean’s Interior
Science 311: 496-

KB Sørensen, A Teske (2006)
Stratified Communities of Active Archaea in Deep Marine Subsurface Sediments
Applied and Environmental Microbiology, 72: 4596-4603

E Cytryn, D Minz, A Gieseke, J van Rijn (2006)
Transient development of filamentous Thiothrix species in a marine sulfide oxidizing, denitrifying fluidized bed reactor
FEMS Microbiology Letters. 256: 22

K Holloway, VE. Lawson, AJ Jeffreys (2006)
Allelic recombination and de novo deletions in sperm in the human ß-globin gene region
Human Molecular Genetics, 15:1099-1111

A Oldfors, AR Moslemi, L Jonasson, M Ohlsson, G Kollberg, C Lindberg (2006)
Mitochondrial abnormalities in inclusion-body myositis.
Neurology, 66:S49-S55

* C Sorin, L Negroni, T Balliau, H Corti, MP Jacquemot, M Davanture, G Sandberg, M Zivy, C Bellini (2006)
Proteomic Analysis of Different Mutant Genotypes of Arabidopsis Led to the Identification of 11 Proteins Correlating with Adventitious Root Development
Plant Physiology 140: 349-364

** GD Peckham, RC Bugos, WW Su (2006)
Purification of GFP fusion proteins from transgenic plant cell cultures.
Protein Expression and Purifcation 49: 183–189

JL Brunner, K Richards, JP Collins (2005)
Dose and host characteristics influence virulence of ranavirus infections
Oecologia, 144: 399 - 406

DY Yang , JR Woiderskib, JC Driver (2005)
DNA analysis of archaeological rabbit remains from the American Southwest
Journal of Archaeological Science, 32: 567–578

CF Speller, DY Yang, B Hayden (2005)
Ancient DNA investigation of prehistoric salmon resource utilization at Keatley Creek, British Columbia, Canada
Journal of Archaeological Science 32: 1378-1389

MD Schrenzel, GA Maalouf, PM Gaffney, D Tokarz, LL Keener, D McClure, S Griffey, D McAloose, BA Rideout (2005)
Molecular Characterization Of Isosporoid Coccidia (Isospora And Atoxoplasma Spp.) in Passerine Birds.
J. Parasitology, 91: 635–647

AM Mendes Pereira, M Strasberg-Rieber, M Rieber (2005)
Invasion-associated MMP-2 and MMP-9 are Up-regulated Intracellularly in Concert with Apoptosis Linked to Melanoma Cell Detachment
Clinical and Experimental Metastasis, 22: 285 - 295

KB Sørensen, DE Canfield, AP Teske, A Oren (2005)
Community Composition of a Hypersaline Endoevaporitic Microbial Mat
Applied and Environmental Microbiology 71: 7352-7365

AC Sims,RS Baric, B Yount, SE Burkett, PL Collins, RJ Pickles (2005)
Severe Acute Respiratory Syndrome Coronavirus Infection of Human Ciliated Airway Epithelia: Role of Ciliated Cells in Viral Spread in the Conducting Airways of the Lungs
J. Virology 79: 15511-15524

T Gebru-Woldearegai, A Hailu, MP Grobusch, JFJ Kun (2005)
Molecular Surveillance of Mutations in Dihydrofolate Reductase and Dihyropteroate Synthase Genes of Plasmodium Falciparum in Ethiopia
Am. J. Trop. Med. Hyg. 73: 1131-1134

C Mota, MA Head, JA Ridenoure, JJ Cheng, FL de los Reyes (2005)
Effects of Aeration Cycles on Nitrifying Bacterial Populations and Nitrogen Removal in Intermittently Aerated Reactors
Applied and Environmental Microbiology 71: 8565-8572

NG Schwarz, S Oyakhirome, M Pötschke, B Gläser, PK Klouwenberg, H Altun, AA Adegnika, S Issifou, JFJ Kun, PG Kremsner, MP Grobusch (2005)
5-Day Nonobserved Artesunate Monotherapy for Treating Uncomplicated Falciparum Malaria in Young Gabonese Children
Am. J. Trop. Med. Hyg. 73: 705-709

E Cytryn, J van Rijn, A Schramm, A Gieseke, D de Beer, D Minz (2005)
Identification of Bacteria Potentially Responsible for Oxic and Anoxic Sulfide Oxidation in Biofilters of a Recirculating Mariculture System.
Appl. Envir. Microbiol 71: 6134 - 6141

L De Gelder, FPJ Vandecasteele, CJ Brown, LJ Forney, EM Top (2005)
Plasmid Donor Affects Host Range of Promiscuous IncP-1ß Plasmid pB10 in an Activated-Sludge Microbial Community.
Appl. Envir. Microbiol. 71: 5309 - 5317

CB Blackwood, A Oaks, JS Buyer (2005)
Phylum- and Class-Specific PCR Primers for General Microbial Community Analysis.
Appl. Envir. Microbiol. 71: 6193 - 6198

S Mahmood, G Paton, J Prosser (2005)
Cultivation-independent in situ molecular analysis of bacteria involved in degradation of pentachlorophenol in soil
Environmental Microbiology 7: 1349-1360

G Kollberg, M Jansson, A Perez-Bercoff, A Melberg, C Lindberg, E Holme, AR Moslemi, A Oldfors (2005)
Low frequency of mtDNA point mutations in patients with PEO associated with POLG1 mutations.
Eur J Hum Genet. 13:463-9

CF Speller, D Yang, B Hayden (2005)
Ancient DNA Investigation of Prehistoric Salmon Resource Utilization at Keatley Creek, British Columbia, Canada
Journal of Archaeological Science 32: 1378-1389

AE Allen, MG Booth, PG Verity, ME Frischer (2005)
Influence of nitrate availability on the distribution and abundance of heterotrophic bacterial nitrate assimilation genes in the Barents Sea during summer
Aquatic Microbial Ecology 39:247-255

GM. Miller, CD Verrico, A. Jassen, M. Konar, H. Yang, H. Panas, M. Bahn, R. Johnson, BK. Madras (2005)
Primate Trace Amine Receptor 1 Modulation by the Dopamine Transporter
Journal of Pharmacology And Experimental Therapeutics 313:983-994

PWP. Ng, CL. Wei, Y. Ruan(2005)
Gene identification signature (GIS) analysis for transcriptome characterization and genome annotation.
Nat. Methods 2: 105-111

MJ. Bown, S. Weston, T. Horsburgh, ML. Nicholson, PRF. Bell, RD. Sayers (2005)
A comparison of methods for determining genotypes at the tumour necrosis factor-alpha -308, interleukin (IL)-1beta +3953, IL-6 -174 and IL-10 -1082/-819/-592 polymorphic loci.
International Journal of Immunogenetics 32: 83-

DS. Walters, M. Wilkins-Ellert, SM. Chung, JE. Staub (2005)
Discovery and Genetic Assessment of Wild Bottle Gourd [Lagenaria Siceraria (Mol.) Standley; Cucurbitaceae] from Zimbabwe.
Economic Botany 58: 501-508

G. Kollberg, AR. Moslemi,C. Lindberg, E. Holme, A. Oldfors (2005)
Mitochondrial Myopathy and Rhabdomyolysis Associated with a Novel Nonsense Mutation in the Gene Encoding Cytochrome c Oxidase Subunit I.
Journal of Neuropathology & Experimental Neurology. 64:123-128

* F Wolschin, S Wienkoop, W Weckwerth (2005)
Enrichment of phosphorylated proteins and peptides from complex mixtures using metal oxide/hydroxide affinity chromatography (MOAC)
Proteomics, 5: 4389 - 4397

* L Wang, KD Cole, AK Gaigalas, YZ Zhang (2005)
Fluorescent Nanometer Microspheres as a Reporter for Sensitive Detection of Simulants of Biological Threats Using Multiplexed Suspension Arrays
Bioconjugate Chem., 16: 194 -199

** C Halweg, WF Thompson, S Spiker (2005)
The Rb7 Matrix Attachment Region Increases the Likelihood and Magnitude of Transgene Expression in Tobacco Cells: A Flow Cytometric Study
The Plant Cell 17: 418-429

R. Mizuno, H. Haruta, T. Moriia, T. Okada, T. Asakawa, K. Hayashi (2004)
Synthesis and AFM visualization of DNA nanostructures.
Thin Solid Films (Proc. of the 7th Int. Symp. on Atomically Controlled Surfaces, Interfaces and Nanostructures), 464-465: 459-463

MT Suzuki, CM Preston, O Béjà, JR de la Torre, GF Steward EF DeLong (2004)
Phylogenetic Screening of Ribosomal RNA Gene-Containing Clones in Bacterial Artificial Chromosome (BAC) Libraries from Different Depths in Monterey Bay.
Microbial Ecology 48: 473 - 488

G Wang, TJ Gentry, G Grass, K Josephson, C Rensing, IL Pepper (2004)
Real-time PCR quantification of a green fluorescent protein-labeled, genetically engineered Pseudomonas putida strain during 2-chlorobenzoate degradation in soil.
FEMS Microbiology Letters 233: 307

SJ Green FC Michel Jr, Y Hadara, D Min (2004)
Similarity of bacterial communities in sawdust- and straw-amended cow manure composts
FEMS Microbiology Letters 233: 115

MT Suzuki, CM Preston, O Beja, JR de la Torre, GF Steward, EF DeLong. (2004)
Phylogenetic screening of ribosomal RNA gene-containing clones in Bacterial Artificial Chromosome (BAC) libraries from different depths in Monterey Bay.
Microb Ecol. 48:473-88.

R. Fjellstrom, A. Concett, A. Conaway-Bormans, AM. McClung, MA. Marchetti, AR. Shank, WD. Park (2004)
Development of DNA Markers Suitable for Marker Assisted Selection of Three Pi Genes Conferring Resistance to Multiple Pyricularia grisea Pathotypes.
Crop Sci. 44:1790-1798

J Hey, Y-J Won, A Sivasundar, R Nielsen, JA Markert (2004)
Using nuclear haplotypes with microsatellites to study gene flow between recently separated Cichlid species.
Molecular Ecology, 4: 909 - 919

KB Sorensen, A Lauer, A Teske (2004)
Archaeal phylotypes in a metal-rich and low-activity deep subsurface sediment of the Peru Basin, ODP Leg 201, Site 1231.
Geobiology 2: 151-161

SJ Green, S Freeman, Y Hadar (2004)
Molecular tools for isolate and community studies of Pyrenomycete fungi.
Mycologia, 96, 439-451

E Domon, T Yanagisawa, A Saito, K Takeda (2004)
Single nucleotide polymorphism genotyping of the barley waxy gene by polymerase chain reaction with confronting two-pair primers.
Plant Breeding: 123, 225

Y. Takai, R. Sugawara, H. Ohinata, A. Takai (2004)
Two types of non-selective cation channel opened by muscarinic stimulation with carbachol in bovine ciliary muscle cells.
J Physiol. 559: 899-922

* ZY Chena, K Southwicka, CD Thulin (2004)
Initial Analysis of the Phosphoproteome of Chinese Hamster Ovary Cells Using Electrophoresis.
Journal of Biomolecular Techniques, 15:249-256

* IR White, R. Pickford, J. Wood, J. M. Skehel, B. Gangadharan, P. Cutler (2004)
A statistical comparison of silver and SYPRO Ruby staining for proteomic analysis Silver staining has been the method most commonly employed for high sensitivity.
Electrophoresis 25: 3048–3054

* GA Khoudoli, IM Porter, JJ Blow JR Swedlow (2004)
Optimisation of the two-dimensional gel electrophoresis protocol using the Taguchi approach
Proteome Sci. 2: 6

* EJ. Finehout, Z. Franck, KH. Lee (2004)
Towards two-dimensional electrophoresis mapping of the cerebrospinal fluid proteome from a single individual.
Electrophoresis, 25: 2564-2575

** K Verthé, S Possemiers, N Boon, M Vaneechoutte W Verstraete (2004)
Stability and activity of an Enterobacter aerogenes-specific bacteriophage under simulated gastro-intestinal conditions
Applied Microbiology and Biotechnology, 65:465 - 472

** K Varadaraj, SS Kumari, A Shiels, RT Mathias (2004)
Aquaporin 1 Rescue Aquaporin 0 Function in the Aquaporin 0 Knockout Mouse and Restore Lens Transparency and Homeostasis.
Invest Ophthalmol Vis Sci 45: E-Abstract 3992

T Nakano, S Morishita, A Katafuchi, M Matsubara, Y Horikawa, H Terato, A Salem, S Izumi, S Pack, K Makino (2003)
Nucleotide Excision Repair and Homologous Recombination Systems Commit Differentially to the Repair of DNA-Protein Crosslinks
Molecular Cell, 28: 147-158

HA Whittington, RW Freeburn, SI Godinho, J Egan, Y Haider, AB Millar (2003)
Analysis of an IL-10 polymorphism in idiopathic pulmonary fibrosis.
Genes Immun. 4:258-64.

JC Fowler, AS Teixeira, LE Vinall, DM Swallow (2003)
Hypervariability of the membrane-associated mucin and cancer marker MUC1
Human Genetics 113: 473 - 479

CA. Conaway-Bormans, MA. Marchetti, CW. Johnson, AM. McClung, WD. Park (2003)
Molecular markers linked to the blast resistance gene Pi-z in rice for use in marker-assisted selection.
Theor Appl Genet. 107:1014-10120

JC Fowler, AS Teixeira, LE Vinall, DM Swallow (2003)
Hypervariability of the membrane-associated mucin and cancer marker MUC1.
Human Genetics 113: 473 - 479

MJ Bown, T. Horsburgh, ML. Nicholson, PRF. Bell, RD. Sayers (2003)
Cytokines and aneurysm repair.
British Journal of Surgery 90: 1085-1092

B. Yount, KM Curtis, EA Fritz, LE Hensley, PB Jahrling, E Prentice, MR Denison, TW Geisbert, RS Baric. (2003)
Reverse genetics with a full-length infectious cDNA of severe acute respiratory syndrome coronavirus
PNAS, 100: 12995 -13000

G Fazio JE Staub, MR Stevens (2003)
Genetic mapping and QTL analysis of horticultural traits in cucumber (Cucumis sativus L.) using recombinant inbred lines.
Theoretical and Applied Genetics, 107: 864 - 874.

S. Avrahami, R. Conrad (2003)
Patterns of Community Change among Ammonia Oxidizers in Meadow Soils upon Long-Term Incubation at Different Temperatures.
Applied and Environmental Microbiology 69: 615 - 6164

M. J. Karbarz, S. R. Kalb , R. J. Cotter, C. R. H. Raetz (2003)
Expression Cloning and Biochemical Characterization of a Rhizobium leguminosarum Lipid A 1-Phosphatase
J. Biol. Chem. 278: 39269-39279.

* B Ghafouri, C Tagesson, M Lindahl (2003)
Mapping of proteins in human saliva using two-dimensional gel electrophoresis and peptide mass fingerprinting
Proteomics 3: 1003-1015

* EJ. Finehout, K.H. Lee (2003)
Comparison of automated in-gel digest methods for femtomole level samples
Electrophoresis 24, 3508-3516

* JA Mackintosh et al., (2003)
A fluorescent natural product for ultra sensitive detection of proteins in one- dimensional and two-dimensional gel electrophoresis.
Proteomics, 3: 2273?2288.

** AR Stuitje , EC Verbree, KH van der Linden, EM Mietkiewska , JP Nap and TJA Kneppers (2003)
Seed-expressed fluorescent proteins as versatile tools for easy (co)transformation and high-throughput functional genomics in Arabidopsis
Plant Biotech J, 1: 301-309

** JP. Moran, S. A. Gerber, C. A. Martin, J. G. Frelinger, E. M. Lord (2003)
Transfection Of The Genes For Interleukin-12 Into The K1735 Melanoma And The Emt6 Mammary Sarcoma Murine Cell Lines Reveals Distinct Mechanisms Of Antitumor Activity.
Int. J. Cancer: 106, 690-698.

** NC. Casavant, D. Thompson, G. A. Beattie, G. J. Phillips, L. J. Halverson (2003)
Use of a site-specific recombination-based biosensor for detecting bioavailable toluene and related compounds on roots.
Environmental Microbiology 5, 238 - .

** SA Gerber, JP Moran, JG Frelinger, JA Frelinger, BM Fenton, EM Lord (2003)
Mechanism of IL-12 mediated alterations in tumour blood vessel morphology: analysis using whole-tissue mounts.
British Journal of Cancer 88, 1453 - 1461.

JDH Stead, AJ Jeffreys (2002)
Structural Analysis of Insulin Minisatellite Alleles Reveals Unusually Large Differences in Diversity between Africans and Non-Africans
Am J Hum Genet. 71: 1273–1284

P Cruz, CH Mejia-Ruiz, R Perez-Enriquez, AM Ibarra (2002)
Isolation and characterization of microsatellites in Pacific white shrimp Penaeus (Litopenaeus) vannamei.
Molecular Ecology Notes, 2: 239.

T. J. Wilson, D. M. Lilley (2002)
Metal ion binding and the folding of the hairpin ribozyme.
RNA, 8: 587- 600.

S. Avrahami, R. Conrad, G. Braker (2002)
Effect of Soil Ammonium Concentration on N2O Release and on the Community Structure of Ammonia Oxidizers and Denitrifiers.
Applied and Environmental Microbiology 68: 5685-5692.

Y. Yuan, P. J. SanMiguel,. J. L. Bennetzen (2002)
Methylation-Spanning Linker Libraries Link Gene-Rich Regions and Identify Epigenetic Boundaries in Zea mays
Genome Res. 12: 1345-1349, 2002

D. A. Lafontaine, D.G. Norman, D.M.J. Lilley (2002)
The global structure of the VS ribozyme.
EMBO J. 21: 2461 - 2471.

* JL Hotchkiss (2002)
Proteins and Proteomics: A Laboratory Manual Richard J. Simpson (Editor),
Cold Spring Harbor Laboratory

* B Ghafouri, B Ståhlbom, C Tagesson, M Lindahl (2002)
Newly identified proteins in human nasal lavage fluid from non-smokers and smokers using two-dimensional gel electrophoresis and peptide mass fingerprinting
Proteomics 2: 112-120

** N Boon, L De Gelder, H Lievens, SD Siciliano, EM Top, W Verstraete (2002)
Bioaugmenting Bioreactors for the Continuous Removal of 3-Chloroaniline by a Slow Release Approach
Environ. Sci. Technol. 2002 ,36, 4698-4704

** KM. Curtis, B. Yount, R. S. Baric (2002)
Heterologous Gene Expression from Transmissible Gastroenteritis Virus Replicon Particles.
J. Virology 76: 1422-1434.

** NC. Casavant G. A. Beattie, G. J. Phillips, L. J. Halverson (2002)
Site-Specific Recombination-Based Genetic System for Reporting Transient or Low-Level Gene Expression.
Appl. Envir. Microbiol. 68: 3588- 3596.

** M. Izallalen, R.C., Levesque, X. Perret, W.J. Broughton, H. Antoun (2002)
Broad-Host-Range MobilizableSuicide Vectors for Promoter Trapping in Gram-Negative Bacteria.
BioTechniques 33: 1038- 1043.

Daum, H., Meis, R., Fiandt, M., Hoffman, L., Seville, M. (2001)
Drug Discovery Tutorial: Dark Reader Transilluminator Maintains Biological Activity and Cloning Efficiencies when Viewing DNA in Gels.
Genetic Engineering News 21:19 32-34

H. W. White, M. Wu (2001)
Factors affecting quantitation of DNA bands in gels using a charge-coupled device imaging system.
Electrophoresis 22: 860-863

CJ Bergman, JT Delgado, AM McClung, RG Fjellstrom (2001)
An Improved Method for Using a Microsatellite in the Rice Waxy Gene to Determine Amylose Class.
Cereal Chem, 78: 257-260

D. A. Lafontaine, D.G. Norman, D.M.J. Lilley (2001)
Structure, folding and activity of the VS ribozyme: importance of the 2-3-6 helical junction.
EMBO J. 20: 1415-1424.

G. Eller, P. Frenzel (2001)
Changes in Activity and Community Structure of Methane-Oxidizing Bacteria over the Growth Period of Rice.
Appl. Envir. Microbiol. 67: 2395-2403.

E. Smit, P. Leeflang, S. Gommans, J. van den Broek, S. van Mil, K. Wernars (2001)
Diversity and Seasonal Fluctuations of the Dominant Members of the Bacterial Soil Community in a Wheat Field as Determined by Cultivation and Molecular Methods.
Appl. Envir. Microbiol. 67: 2284-2291.

* C Kemper, K Berggren, Z Diwu, WF Patton (2001)
An improved, luminescent europium-based stain for detection of electroblotted proteins on nitrocellulose or polyvinylidene difluoride membranes
Electrophoresis 22: 881-889

* R. Graf, P. Friedl (2001)
Charge-coupled device camera-based detection of fluorescence-labeled proteins immobilized on nitrocellulose membranes.
Electrophoresis 22: 890-895

** TM Timms-Wilson, MJ Bailey (2001)
Reliable use of green fluorescent protein in fluorescent pseudomonads
J Microbiological Methods, 46: 77-80

ZY. Zhao, T. J. Wilson, K. Maxwell, D. M. Lilley (2000)
The folding of the hairpin ribozyme: dependence on the loops and the junction
RNA, 6: 1833-1846.

Kovacs B., Egedi S., Bartfai R., Orban L. (2000)
Male-specific DNA markers from African catfish (Clarias gariepinus).
Genetica 110: 267-76

T. Henckel, U. J?ckel, S. Schnell, R. Conrad. (2000)
Molecular Analyses of Novel Methanotrophic Communities in Forest Soil That Oxidize Atmospheric Methane.
Appl. Envir. Microbiol. 66: 1801-1808.

Stead, J.D.H., Jeffreys, A. J. (2000)
Allele diversity and germline mutation at the insulin minisatellite.
Hum. Mol. Gen. 9: 713-723.

* MF. Lopez, K Berggren, E Chernokalskaya, A Lazarev, M Robinson, WF Patton (2000)
A comparison of silver stain and SYPRO Ruby Protein Gel Stain with respect to protein detection in two-dimensional gels and identification by peptide mass profiling.
Electrophoresis 21: 3673-3683

* TH Steinberg, WM Lauber, K Berggren, C Kemper, S Yue, WF Patton (2000)
Fluorescence detection of proteins in sodium dodecyl sulfate-polyacrylamide gels using environmentally benign, nonfixative, saline solution.
Electrophoresis 21: 497-508

* Steinberg, T., Chernokalskaya, E., Berggren, K., Lopez, M., Diwu, Z., Haugland, R., Patton, W. (2000)
Ultrasensitive fluorescence protein detection in isoelectric focusing gels using a ruthenium metal chelate stain.
Electrophoresis 21: 486-496

* Steinberg, T., Lauber, W., Berggren, K. Kemper, C., Yue, S., Patton, W. (2000)
Fluorescence Detection of Proteins in SDS-Polyacrylamide Gels using Environmentally Benign, Non-Fixative, Saline Solution.
Electrophoresis 21: 497-508

* Berggren K, Chernokalskaya E, Steinberg TH, Kemper C, Lopez MF, Diwu Z, Haugland RP, Patton WF. (2000)
Background-free, high sensitivity staining of proteins in one- and two-dimensional sodium dodecyl sulfate-polyacrylamide gels using a luminescent ruthenium complex.
Electrophoresis 21:2509-2521

* Berggren, K., Steinberg, T., Lauber, W., Carroll, J., Lopez, M., Chernokalskaya, E., Zieske, L., Diwu, Z., Haugland, R., Patton, W. (1999)
A luminescent ruthenium complex for ultrasensitive detection of proteins immobilized on membrane supports.
Anal. Biochem. 276: 129-143.

** K. Madin, T. Sawasaki, T. Ogasawara, Y. Endo (2000)
A highly efficient and robust cell-free protein synthesis system prepared from wheat embryos: Plants apparently contain a suicide system directed at ribosomes.
PNAS 97: 559-564.

T. Henckel, M. Friedrich, R. Conrad (1999)
Molecular Analyses of the Methane-Oxidizing Microbial Community in Rice Field Soil by Targeting the Genes of the 16S rRNA, Particulate Methane Monooxygenase, and Methanol Dehydrogenase
Appl. Envir. Microbiol., 65: 1980 - 1990.
Clare Chemical Research

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